PhyloD
This project has moved to http://Github.com/Microsoft/PhyloDA web server exposing this components of this tool is available at
http://phylod.research.microsoft.com
References
Z. Brumme, C. Brumme,
D. Heckerman, B. Korber, M. Daniels,
J. Carlson, C. Kadie, T. Bhattacharya, C. Chui, T. Mo, R. Hogg, J. Montaner, N. Frahm, C. Brander, B. Walker, P. Harrigan.
Evidence of Differential HLA Class I-Mediated Viral Evolution in Functional and Accessory/Regulatory Genes of HIV-1. PLoS Pathogens,
3(7): e94, July 2007.
J. Carlson, C. Kadie, S. Mallal, and
D. Heckerman. Leveraging hierarchical population structure in discrete association studies. PLoS ONE,
2(7): e591, July 2007.
Tanmoy Bhattacharya, Marcus Daniels,
David Heckerman, Brian Foley, Nicole Frahm,
Carl Kadie,Jonathan Carlson, Karina Yusim, Ben McMahon, Brian Gaschen, Simon Mallal, James I. Mullins, David C. Nickle, Joshua Herbeck, Christine Rousseau, Gerald H. Learn, Toshiyuki Miura, Christian Brander, Bruce Walker, Bette Korber.
Founder Effects in the Assessment of HIV Polymorphisms and HLA Allele Associations. Science 16 March 2007: Vol. 315. no. 5818, pp. 1583 - 1586
Web Version, including some general information
http://phylod.research.microsoft.com
Pre-Compiled Programs for Windows
https://github.com/Microsoft/PhyloD/releases
Source Code Files
(To download see
Source Code tab above)
- Solution file: PhyloTree\PhyloTree.sln
- Build directory: PhyloTree\PhyloD\bin\Release
- Build directory: PhyloTree\Tabulate\bin\Release
- Solution file: PhyloTree\PhyloDCCS.sln
- Build directory: PhyloTree\PhyloDCcs\bin\Release
- Solution file: PhyloTree\PhyloDDNsln
- Build directory: PhyloTree\PhyloDDN\bin\Release
Exe's:
How to run regression tests